COMETS is a software platform for performing computer simulations of metabolism in spatially structured microbial communities. It is based on stoichiometric modeling of the genome-scale metabolic network of individual microbial species (using dynamic flux balance analysis), and on a discrete approximation of convection-diffusion equations. 

COMETS in journal articles:

biRxiv, 2024

Nature Protocols, 2021

Cell Report, 2014

J. Royal Society - Interface, 2021 

PLOS Biology 2016

ISME Journal, 2018

Biomedical Physics And Engineering Express, 2018

mSystems, 2018

PNAS, 2018